Enviroinformatics » Environmental Bioinformatics Knowledge Base


  Spatiotemporal Mapping/Analysis

Spatiotemporal mapping and analysis of multivariate environmental, demographic, socioeconomic, behavioral & public health data

Computational Analysis Tools

Resource Developer
Agent Analyst (“Agent Based Modeling Extension for ArcGIS”) University of Redlands, Argonne National Laboratory
ANTHROPAC (“program for cultural domain analysis”) Analytic Technologies
Arc Hydro (ArcGIS add-in to support geospatial and temporal data analyses) Esri
ArcGIS (geographical information system mapping and visualization) Esri
ArcPad Esri
BMElib (“MATLAB toolbox of modern spatiotemporal geostatistics implementing the Bayesian Maximum Entropy theory”) Marc Serre, University of North Carolina
CAMEO MARPLOT (Mapping applications for response, planning, and local operational tasks) USEPA and NOAA
CartoDB Vizzuality team
Cartographica ClueTrust
CartoMobile ClueTrust
CropScape (“crop-specific land cover data layer created annually for the continental United States”) USDA National Agricultural Statistics Service
Didger (“geoprocessing and data conversion tool”) Golden Software Inc.
DIVA-GIS (“mapping and geographic data analysis”) DIVA-GIS development team
EJView (“mapping tool […] to create maps and generate detailed reports based on the geographic areas and data sets”) USEPA
Encom Discover (“desktop Geographical Information System”) Encom and Pitney Bowes
Encom Discover PA – Encom Discover Profile Analyst Encom and Pitney Bowes
Encom QuickMag (“magnetic modeling package”) Encom and Pitney Bowes
Envision (“A spatially explicit, distributed, multiagent-based framework for policy assessment and alternative futuring”) Envision development team, Oregon State University
EnvStats – Package for Environmental Statistics, including US EPA Guidance S.P. Millard
EQuIS (“Environmental data management”) EarthSoft Inc.
ERDAS Imagine (“geospatial data authoring system, supplies tools for […] Remote Sensing, Photogrammetry and GIS needs”) Hexagon Geospatial
European AirBase reporting stations European Environment Agency
EVS Pro – Environmental Visualization System Pro – 3D Mapping C Tech
GME – Geospatial Modelling Environment Spatial Ecology LLC
Google Earth Pro (“3D interactive globe that can be used to aid planning, analysis and decision making”) Google
Google Map Maker (“allows […] to add and update geographic information for […] users to see in Google Maps and Google Earth”) Google
GRASS GIS – Geographic Resources Analysis Support System Geographic information system Open Source Geospatial Foundation
GS+ (“Geostatistics for the Environmental Sciences”) Gamma Design Software
GSLIB – Geostatistical Software Library Stanford University
HADCM3 – Hadley Centre Coupled Model The Hadley Centre for Climate Prediction and Research and USEPA
IDEA – Infusing satellite Data into Environmental air quality Applications NASA- EPA-NOAA partnership
LandView US Census Bureau
MapBox MapBox team
MapInfo Professional (“desktop mapping application”) MapInfo and Pitney Bowes
MapInfo Vertical Mapper (“tool for geospatial data analysis”) MapInfo and Pitney Bowes
MATSim – Multi-Agent Transport Simulation I.L.S.T.S., Technische Universität Berlin; I.T.P.S., Swiss Federal Institute of Technology, Zurich and Senozon
OpenStreetMap (“OpenStreetMap is […] data about roads, trails, cafés, railway stations, and much more, all over the world”) OpenStreetMap team
Ortelius (mapping software for Mac OS X) Mapdiva, LLC
PostGIS (“Spatial and Geographic objects for PostgreSQL”) OSGeo Project
QGIS (“Create, edit, visualise, analyse and publish geospatial information”) QGIS development team
RETIGO – REal TIme GeOspatial viewer (“web-based tool for researchers and citizen scientists to explore their air measurements”) USEPA
SimCLIM (“software package […] to facilitate climate risk and adaptation assessments”) CLIMsystems Ltd.
SimCLIM for ArcGIS / Climate (“add-in […] to produce spatial images of climate change”) CLIMsystems Ltd.
SimCLIM for ArcGIS / Marine (“add-in […] to explore the impacts of climate change on marine biogeochemical cycles”) CLIMsystems Ltd.
STEM – Spatiotemporal Epidemiological Modeler Eclipse
TopoToolbox (“MATLAB program for the analysis of digital elevation models”) TopoToolbox development team
VegScape – Vegetation Condition Explorer USDA National Agricultural Statistics Service
VERDI – Visualization Environment Rich Data Interpretation Argonne National Laboratory, USEPA, and CMAS Center
Worldmapper (“collection of world maps, where territories are re-sized on each map according to the subject of interest”) Worldmapper Team

Information Portals and Databases

Resource Developer
ADB – Assessment Database (“database application for tracking water quality assessment data”) USEPA
AERONET – AErosol RObotic NETwork data AERONET
AHS – American Housing Survey US Census Bureau
AirBase (“European air quality database”) European Environment Agency and European Topic Centre on Air Pollution and Climate Change and Mitigation (ETC/ACM)
AIRMEX (European Indoor Air Monitoring and Exposure Assessment Project database) European Commission, JRC, IHCP
American Communities Project American Communities Project, American University, Washington, DC
AQS – Air Quality System USEPA
Atlas of United States Mortality CDC
Cancer Mortality Maps NCI (National Cancer Institute), NIH
CDC WONDER – Wide-ranging Online Data for Epidemiologic Research CDC
Census of Agriculture USDA NASS
CEP – Cumulative Exposure Project USEPA
CGD – Customized Geographic Database Biota of North America Program (BONAP)
CHSI – Community Health Status Indicators CDC
CPS – Current Population Survey US Census Bureau
Digital Elevation Data USDA NRCS
Disease Maps 2012 US Geological Survey
DIVA-GIS (GIS data by country) DIVA-GIS development team
EMAP – Environmental Monitoring and Assessment Program USEPA
Esri Business Analyst Esri
GADM database of Global Administrative Areas GADM development team
GeoLytics Demographics Estimates/ Projections GeoLytics, Inc.
Health Indicators Warehouse National Center for Health Statistics
HealthMap Boston Children’s Hospital
Index Mundi – Maps IndexMundi development team
Interactive Lyme Disease Map CDC
Italian demographics data ISTAT
LandScan USA Oak Ridge National Laboratory
LULC – Land Use and Land Cover US Geological Survey
MapUSA – Human mapping project John Logan
MesoWest (Current and archived weather observations and summaries from across the United States) Dept. of Atmos. Sci., University of Utah
MODIS Satellite Land, Ocean, Atmosphere Products NASA
NACJD – National Archive of Criminal Justice Data ICPSR, University of Michigan
NADP – National Atmospheric Deposition Program National Atmospheric Deposition Program
NAPA – North American Plant Atlas Biota of North America Program (BONAP)
NATA – National Air Toxics Assessments USEPA
National Atlas (service will be removed on September 30, 2014) United States Department of the Interior
National Geochemical Survey US Geological Survey
NAWQA – National Water-Quality Assessment Program US Geological Survey
NCHS – National Center for Health Statistics Data CDC
NCI State Cancer Profiles NCI (National Cancer Institute), NIH
NED – National Elevation Dataset US Geological Survey
NGA – National Geochemical Atlas USGS
NHAPS – The National Human Activity Pattern Survey USEPA
NHPN – National Highway Planning Network US Department of Transportation
NLCD – National Land Cover Dataset US Geological Survey
NMFS – National Marine Fisheries Service NOAA
NWIS – National Water Information System US Geological Survey
OpenStreetMap (“OpenStreetMap is […] data about roads, trails, cafés, railway stations, and much more, all over the world”) OpenStreetMap team
READY – Real-time Environmental Applications and Display sYstem (Current and forecast meteorological data; Archived data also available) Air Resources Laboratory, NOAA
Soil Data Mart (see Web Soil Survey) USDA NRCS
SSURGO – Soil Survey Geographic Database USDA NRCS
Statistical Abstract US Census Bureau
STATSGO/ U.S. General Soil Map USDA NRCS
STORET – STOrage and RETrieval USEPA
Taxonomic Data Center Biota of North America Program (BONAP)
TIGER – Topologically Integrated Geographic Encoding and Referencing US Census Bureau
US Census Population Database US Census Bureau
US Economic Census US Census Bureau
US Health Map (Interactive Health Trends Map of US at County level for both Genders) Institute for Health Metrics and Evaluation (IHME)
Weather Underground (Current and historical weather forecasts and reports from across the world) The Weather Channel, LLC
Web Soil Survey USDA
WebGIS (A Geographic Information System Resource) Lakes Enviornmental Software
WHO Global Health Observatory Map Gallery World Health Organization (WHO)
WQN – Water Quality Network US Geological Survey

Release Mapping/Modeling

Mapping or modeling environmental releases of chemical, biological and radiological agents

Computational Analysis Tools

Resource Developer
ALOHA – Areal Locations of Hazardous Atmospheres NOAA
ALOHA (Areal Locations of Hazardous Atmospheres) ArcMap Import Tools US NOAA Office of Response and Restoration
BEIS – Biogenic Emission Inventory System USEPA
CAMEO MARPLOT (Mapping applications for response, planning, and local operational tasks) USEPA and NOAA
DMR Pollutant Loading Tool – Discharge Monitoring Report Pollutant Loading Tool USEPA
EMS-HAP – Emissions Modeling System for Hazardous Pollutants USEPA
Envirofacts (provides environmental information at a local area of interest) USEPA
Enviromapper for Envirofacts (“provides […] information about environmental activities that may affect air, water, and land anywhere in the US”) USEPA
EnvStats – Package for Environmental Statistics, including US EPA Guidance S.P. Millard
EQuIS (“Environmental data management”) EarthSoft Inc.
IDEA – Infusing satellite Data into Environmental air quality Applications NASA- EPA-NOAA partnership
i-SVOC (“application for dynamic modeling of the emissions, transport, sorption, and distribution of semi-volatile organic compounds (SVOCs) in the indoor environment”) USEPA
LandGEM – Landfill Gas Emissions Model USEPA
MCIP – Meteorology-Chemistry Interface Processor USEPA
MEGAN – Model of Emissions of Gases and Aerosols from Nature NCAR Earth System Laboratory
MOBILE USEPA
MOVES – Motor Vehicle Emission Simulator USEPA
SMOKE – Sparse Matrix Operator Kernel Emissions CMAS Center, UNC-Chapel Hill
TANKS USEPA
TOXMAP Division of Specialized Information Services, US National Library of Medicine

Information Portals and Databases

Environmental Fate and Transport

Environmental fate and transport characterization

Computational Analysis Tools

Resource Developer
3DFEMWATER/ 3DLEWASTE – Three-Dimensional Finite Element Model of Water Flow/ Three-Dimensional Lagrangian-Eulerian Finite Element Model of Waste Transport USEPA
Acts/ Risk – Analytical Contaminant Transport Analysis System/ Health Risk Analysis Software M. M. Aral et al., Georgia Institute of Technology, GA
AERMOD – AMS/EPA Regulatory Model USEPA
AGDISP – AGricultural DISPersal USDA Forest Service
AgDRIFT USEPA, USDA Forest Service and Spray Drift Task Force
AGWA – Automated Geospatial Watershed Assessment USEPA, USDA and University of Arizona
ALOHA – Areal Locations of Hazardous Atmospheres NOAA
ALOHA (Areal Locations of Hazardous Atmospheres) ArcMap Import Tools US NOAA Office of Response and Restoration
AQTESOLV – AQuifer TEst SOLVer HydroSOLVE, Inc.
AQUATOX (“simulation model for aquatic systems”) USEPA and R. Park, Ecomodeling
AquiferWin32 ESI Ltd.
ASPEN – Assessment System for Population Exposure Nationwide USEPA
BASINS – Better Assessment Science Integrating point & Non-point Sources USEPA
CALPro (CALPUFF, CALMET) Atmospheric Studies Group at TRC
CalTOX California DTSC
CAMx – Comprehensive Air Quality Model with Extensions Environ
CE-QUAL-W2 U.S. Army Corps of Engineers and Portland State University
ChemStat (“statistical analysis of ground water monitoring data at RCRA facilities”) Starpoint Software Inc.
CMAQ – Community Multi-scale Air Quality modeling system CMAS Center, UNC-Chapel Hill
COMMUTER USEPA
DFLOW USEPA
DMR Pollutant Loading Tool – Discharge Monitoring Report Pollutant Loading Tool USEPA
EFDC – Environmental Fluid Dynamics Code Virginia Institute of Marine Science, The College of William and Mary (J. M. Hamrick) and USEPA
EMSOFT – Exposure Model for Soil-Organic Fate and Transport RTP
EnvStats – Package for Environmental Statistics, including US EPA Guidance S.P. Millard
EPANET (“Models the Hydraulic and Water Quality Behavior of Water Distribution Piping Systems”) USEPA
EPI – Estimation Program Interface Suite – suite of physical/chemical property and environmental fate estimation programs USEPA
EQuIS (“Environmental data management”) EarthSoft Inc.
EXAMS – Exposure Analysis Modeling System USEPA
FACT – Flow And Contaminant Transport Savannah River Technology Center and US DOE
FIRST – FQPA Index Reservoir Screening Tool USEPA
FOCUS – FOrum for Co-ordination of pesticide fate models and their USe FOCUS team, EU Commission
FRAMES-3MRA – Multimedia, Multi-pathway, Multi-receptor Exposure and Risk Assessment USEPA
GARR – Gross Alpha Radium Regulation USEPA
GasSim (“simulates the fate of landfill gas arising from managed or unmanaged landfill sites”) Golder Associates and Environment Agency of England and Wales
GBPCALC – Gross Beta Photon Calculator USEPA
GENEEC2 – Generic Estimated Environmental Concentration USEPA
GMS – Groundwater Modeling System Aquaveo
Groundwater Vistas (“3D groundwater flow and contaminant transport modeling, calibration and optimization using the MODFLOW suite of codes”) Groundwater Vistas development team
HPAC – Hazard Prediction and Assessment Capability DTRA – Defense Threat Reduction Agency
HSPF – Hydrological Simulation Program – FORTRAN USEPA
HYPACT – Hybrid Particle And Concentration Transport Model ATMET
HYSPLIT – Hybrid Single Particle Lagrangian Integrated Trajectory Model NOAA Air Resources Laboratory
IAQX – Simulation Tool Kit for Indoor Air Quality and Inhalation Exposure USEPA
IGSM – Integrated Global System Model MIT Joint Program on the Science and Policy of Global Change and USEPA
IsoConc USEPA
IsoSource USEPA
i-SVOC (“application for dynamic modeling of the emissions, transport, sorption, and distribution of semi-volatile organic compounds (SVOCs) in the indoor environment”) USEPA
KABAM – Kow (based) Aquatic BioAccumulation Model USEPA
LSPC – Loading Simulation Program in C++ USEPA
MAGICC/SCENGEN – Model for the Assessment of Greenhouse Gas Induced Climate Change/Scenario Generator National Center for Atmospheric Research
MEASURE – Mobile Emissions Assessment System for Urban and Regional Evaluation Georgia Institute of Technology and USEPA
MENTOR-1A – Modeling ENvironment for TOtal Risk studies in a One Atmosphere setting Computational Chemodynamics Laboratory
MENTOR-4M – Modeling ENvironment for TOtal Risk studies for Multiple co-occurring contaminants and Multimedia, Multipathway, Multiroute exposures Computational Chemodynamics Laboratory
MEPAS – Multimedia Environmental Pollutant Assessment System Pacific Northwest National Laboratory
MESOPUFF – Mesoscale Puff Model USEPA
MINTEQA2 USEPA and Jerry Allison, Computer Sciences Corp.
MM5 or PSU/NCAR mesoscale model Pennsylvania State University National Center for Atmospheric Research
Models-3 Technical Support Forum CMAS Center
Modflow US Geological Survey
MT3DMS – Modular 3-D Multi-Species Transport model (previously MT3D) S.S. Papadopulos & Associates, Inc. and USEPA
NWPCAM – Nation Water Pollution Control Assessment Model USEPA
P2P – Pollution Prevention Progress (see TRACI) USEPA
PCRAMMET USEPA
PEARL – Pesticide Emission Assessment at Regional and Local scales, GeoPEARL Alterra, PBL and RIVM
PFAM – Pesticides in Flooded Application Model USEPA
PRZM – Pesticide Root Zone Model USEPA
PRZM/EXAMS Shell USEPA
PRZM-GW USEPA
QUAL2E (Enhanced Stream Water Quality model) Tufts University and USEPA
QUAL2K – River and Stream Water Quality Model USEPA
QUIC – Quick Urban & Industrial Complex Los Alamos National Laboratory
RAMS – Regional Atmospheric Modeling System ATMET, LLC
REMSAD – Regional Modeling System for Aerosols and Deposition ICF Consulting
RESRAD – RESidual RADioactive Argonne National Laboratory
RPM-AERO (Modelling platform for studying photochemical gaseous and aerosol phase processes) Computational Chemodynamics Laboratory
R-UNSAT USGS
SCIPUFF – Second-order Closure Integrated PUFF Model Titan Products
SIP – Screening Imbibition Program (“model to estimate chemical exposure from drinking water alone in birds and mammals”) USEPA
SMS – Surface Water Modeling System Coastal and Hydraulics Laboratory
SWCC – Surface Water Concentration Calculator USEPA
TerrPLANT USEPA
Tier 1 Rice Model (“estimate surface water exposure from the use of pesticides in rice paddies”) USEPA
TOXSWA – TOXic substances in Surface WAters TOXSWA team
TRACI – Tool for the Reduction and Assessment of Chemical and other Environmental Impacts (previously, P2P) USEPA
UAM-V – Urban Airshed Model-V ICF International and USEPA
Unmix USEPA
USEtox – UNEP-SETAC (Life Cycle Initiative) Tox USEtox development team
VLEACH Dynamac Corporation and USEPA
WASP – Water Quality Analysis Simulation Program USEPA
WATERSHEDSS – WATER, Soil, and Hydro- Environmental Decision Support System North Carolina State University and USEPA
WhAEM2000 USEPA
WMS – Watershed Modeling System Aquaveo
WRF – The Weather Research & Forecasting Model WRF Consortium
WRF User’s Forum WRF User’s Forum Team
WRF-Chem – WRF weather prediction coupled with chemistry WRF-Chem development team

Information Portals and Databases