Data/Simulation Pattern Analysis

 
Data Mining/Pattern Recognition

Data mining and pattern recognition

Computational Analysis Tools

ResourceDeveloper
1000Minds ("decision-making software")1000Minds Ltd. and University of Otago (P. Hansen, F. Ombler)
AuvTool ("statistical analysis of variability and uncertainty associated with fitting parametric probability distributions to data sets")North Carolina State University and USEPA
BANJO: Bayesian Network Inference with Java ObjectsDuke University
IBM SPSS ModelerSPSS Inc. and IBM
icsiboosticsiboost project team
MarathonUniversity of California, Irvine
MEANSIM - Mean Similarity AnalysisUSEPA
MENTOR-DOT - Modeling ENvironment for TOtal Risk studies Diagnostic and Optimization ToolsComputational Chemodynamics Laboratory
OrangeBioinformatics Laboratory, University of Ljubljana, Slovenia
Rapid Minerrapid-i
RS-HDMR - Random-Sampling High Dimensional Model RepresentationRabitz Laboratory, Princeton University and Computational Chemodynamics Laboratory
SAS-EM - SAS Enterprise MinerSAS Institute Inc.
See5/ C5.0RuleQuest
SPLS - Sparse partial least squaresKeles Research Group, University of Wisconsin
Spotfire Decision Site SoftwareTIBCO Spotfire
Statistica (with Data and Text Miner)StatSoft
SYSTATSystat Software, Inc.
TMVA - Toolkit for Multivariate Data Analysis with ROOTTMVA development team
Tweet ArchivistTweet Archivist
WekaMachine Learning Group, University of Waikato
Classification/Clustering

Classification and clustering

Computational Analysis Tools

ResourceDeveloper
BicAT - Biclustering Analysis ToolboxETH, Zurich
Biopython ("tools for biological computation written in Python")Biopython development team
EP_GOS_ClustFloudas Research Group, Princeton University
geWorkBench - Genomics WorkbenchNCI (National Cancer Institute), NIH
Globally Optimal BiclusteringAndroulakis Laboratory, Rutgers University
GMC impute - Gaussian mixture clustering imputeComputational Chemodynamics Laboratory
GRNN_ImputeComputational Chemodynamics Laboratory
icsiboosticsiboost project team
KNN_ImputeComputational Chemodynamics Laboratory
OrangeBioinformatics Laboratory, University of Ljubljana, Slovenia
Machine Learning Algorithms

Machine learning algorithms

Computational Analysis Tools

ResourceDeveloper
Automated Particle Tracking and Analysis SoftwareUniversity of California, Irvine
GMC impute - Gaussian mixture clustering imputeComputational Chemodynamics Laboratory
icsiboosticsiboost project team
MLC++Silicon Graphics International Corp., CA
OrangeBioinformatics Laboratory, University of Ljubljana, Slovenia
TMVA - Toolkit for Multivariate Data Analysis with ROOTTMVA development team
WekaMachine Learning Group, University of Waikato
Sensitivity/Uncertainty Analysis

Sensitivity and uncertainty analysis

Computational Analysis Tools

ResourceDeveloper
@RISK - At Risk ("risk analysis using Monte Carlo simulation")Palisade Corporation
AuvTool ("statistical analysis of variability and uncertainty associated with fitting parametric probability distributions to data sets")North Carolina State University and USEPA
BetaBuster ("Bayesian Epidemiologic Screening" technique for "obtaining specific Beta prior distributions")BetaBuster team
BUGS - Bayesian inference Using Gibbs Sampling (OpenBUGS/ WinBUGS)BUGS project team
BugsXLA - A GUI for WinBugsPhil Woodward
CHMMBOX - Coupled Hidden Markov Modelling ToolboxUniversity of Oxford
Crystal BallDecisioneering Inc./ Oracle
GasSim ("simulates the fate of landfill gas arising from managed or unmanaged landfill sites")Golder Associates and Environment Agency of England and Wales
MCSimFree Software Foundation, Inc
MENTOR-DOT - Modeling ENvironment for TOtal Risk studies Diagnostic and Optimization ToolsComputational Chemodynamics Laboratory
ModelAssist (for @RISK and Crystal Ball)Vose Software, Belgium
ModelRiskVose Software, Belgium
PEST - Parameter ESTimationPEST development team
RS-HDMR - Random-Sampling High Dimensional Model RepresentationRabitz Laboratory, Princeton University and Computational Chemodynamics Laboratory
SRSM - Stochastic Response Surface MethodComputational Chemodynamics Laboratory